PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00047654001

Common Name

GSBRNA2T00047654001, LOC106432143

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 199aa MW: 22191.5 Da PI: 10.0084

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00047654001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	96.7	1.6e-30	22	72	6	56
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrr 56 + cprC+s+nt+fCyynnys+sqPry Ck+Crr Wt+GG+lrn+ Gg+r GSBRNA2T00047654001 22 RICPRCNSDNTRFCYYNNYSVSQPRYTCKNCRRLWTHGGTLRNISAGGSRI 72 57********************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-19	19	70	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	24.465	22	76	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.1E-28	23	71	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	24	60	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MNKSRVLVRR NNQVSGVKPP PRICPRCNSD NTRFCYYNNY SVSQPRYTCK NCRRLWTHGG 60 TLRNISAGGS RIDQPSVAQV VPVETQQVNH HQTFLHGQET NDFLGSIGDS SSSAGVVGSH 120 FGSLPETHGD VVFPVRSHPP MNRPVFNDGS FPQGYYHVGH VNNYNSYRVN QEDPNKPRQR 180 FNNTMSMNHN TSTSGSRG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00047654001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013728440.1	1e-145	PREDICTED: dof zinc finger protein DOF4.3-like
Swissprot	Q9SUA9	3e-54	DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBL	A0A078GY48	1e-145	A0A078GY48_BRANA; BnaC03g63990D protein
STRING	Bra020910.1-P	3e-91	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1602	17	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21050.1	2e-47	Dof-type zinc finger domain-containing protein

Link Out ? help Back to Top
Entrez Gene	106432143

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]